Bone reconstruction requires the use of autografts from patients’ iliac crest (IC); for large-volume defects bone void fillers and autologous mesenchymal stem cells (MSCs) are often added. The Reamer/Irrigator/Aspirator (RIA) device provides the means of harvesting large amounts of autograft and additionally yields a waste bag containing MSCs, which is currently discarded. The aim of this study was to enumerate and characterise native MSCs from RIA waste bag and compare them to ‘gold-standard’ donor-matched MSCs from IC bone marrow (BM). IC-BM from age matched trauma patients was used as control.